Detailed information of SNP:
|
SNP ID:
sf0107600240(Gbrowse)
Chromosome: chr01 Position: 7600240 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 64.38% | 35.62% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 476 | 3.36% | 96.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 317 | 1.89% | 98.11% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 65 | 1.54% | 98.46% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107600240 | G->A | INTERGENIC | None |