Detailed information of SNP:
|
SNP ID:
sf0107613928(Gbrowse)
Chromosome: chr01 Position: 7613928 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 97.37% | 2.63% |
| All Indica | 793 | 95.46% | 4.54% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 371 | 96.77% | 3.23% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107613928 | G->T | INTERGENIC | None |