Detailed information of SNP:
|
SNP ID:
sf0107627303(Gbrowse)
Chromosome: chr01 Position: 7627303 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 59.31% | 40.69% |
| All Indica | 798 | 93.73% | 6.27% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107627303 | A->T | INTERGENIC | None |