Detailed information of SNP:
|
SNP ID:
sf0107647672(Gbrowse)
Chromosome: chr01 Position: 7647672 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 87.26% | 12.74% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 485 | 64.54% | 35.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 326 | 52.15% | 47.85% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107647672 | A->G | LOC_Os01g13640(LOC_Os01g13640.1) | Non-Synonymous SNP |