Detailed information of SNP:
|
SNP ID:
sf0107710388(Gbrowse)
Chromosome: chr01 Position: 7710388 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 61.43% | 38.57% |
| All Indica | 798 | 95.74% | 4.26% |
| All Japonica | 495 | 3.64% | 96.36% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 92 | 14.13% | 85.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107710388 | A->G | INTERGENIC | None |