Detailed information of SNP:
|
SNP ID:
sf0107728775(Gbrowse)
Chromosome: chr01 Position: 7728775 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 74.35% | 25.65% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 495 | 29.90% | 70.10% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 5.69% | 94.31% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 56.72% | 43.28% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107728775 | T->C | INTERGENIC | None |