Detailed information of SNP:



SNP ID: sf0107755494(Gbrowse)

Chromosome: chr01

Position: 7755494
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 75.55% 24.45%
All Indica799 99.75% 0.25%
All Japonica497 34.21% 65.79%
Aus67 86.57% 13.43%
Indica I375 99.73% 0.27%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 11.64% 88.36%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate68 58.82% 41.18%
Group VI/Aromatic14 71.43% 28.57%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0107755494 A->G LOC_Os01g13830(LOC_Os01g13830.1) INTRON