Detailed information of SNP:
|
SNP ID:
sf0107755494(Gbrowse)
Chromosome: chr01 Position: 7755494 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 75.55% | 24.45% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 34.21% | 65.79% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 11.64% | 88.36% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107755494 | A->G | LOC_Os01g13830(LOC_Os01g13830.1) | INTRON |