Detailed information of SNP:
|
SNP ID:
sf0107824185(Gbrowse)
Chromosome: chr01 Position: 7824185 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 75.25% | 24.75% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 496 | 34.48% | 65.52% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 11.68% | 88.32% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107824185 | T->C | LOC_Os01g13960(LOC_Os01g13960.1) | INTRON |