Detailed information of SNP:
|
SNP ID:
sf0107824906(Gbrowse)
Chromosome: chr01 Position: 7824906 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 82.83% | 17.17% |
| All Indica | 796 | 98.99% | 1.01% |
| All Japonica | 469 | 52.67% | 47.33% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 312 | 33.97% | 66.03% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 64 | 76.56% | 23.44% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107824906 | C->T | LOC_Os01g13960(LOC_Os01g13960.1) | INTRON |