Detailed information of SNP:
|
SNP ID:
sf0107828215(Gbrowse)
Chromosome: chr01 Position: 7828215 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 98.43% | 1.57% |
| All Indica | 787 | 97.97% | 2.03% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 368 | 99.73% | 0.27% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107828215 | G->A | LOC_Os01g13970(LOC_Os01g13970.1) | INTRON |