Detailed information of SNP:
|
SNP ID:
sf0107833437(Gbrowse)
Chromosome: chr01 Position: 7833437 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 95.34% | 4.66% |
| All Indica | 798 | 95.49% | 4.51% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 63.64% | 36.36% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107833437 | G->A | INTERGENIC | None |