Detailed information of SNP:
|
SNP ID:
sf0107835036(Gbrowse)
Chromosome: chr01 Position: 7835036 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 94.59% | 5.41% |
| All Indica | 786 | 94.40% | 5.60% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 51 | 45.10% | 54.90% |
| Indica I | 368 | 94.02% | 5.98% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107835036 | G->C | INTERGENIC | None |