Detailed information of SNP:
|
SNP ID:
sf0107844967(Gbrowse)
Chromosome: chr01 Position: 7844967 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 53.64% | 46.36% |
| All Indica | 798 | 81.20% | 18.80% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 63.81% | 36.19% |
| Temperate Japonica | 335 | 7.76% | 92.24% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107844967 | A->C | INTERGENIC | None |