Detailed information of SNP:
|
SNP ID:
sf0107989856(Gbrowse)
Chromosome: chr01 Position: 7989856 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 95.40% | 4.60% |
| All Indica | 797 | 98.87% | 1.13% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107989856 | G->A | INTERGENIC | None |