Detailed information of SNP:
|
SNP ID:
sf0108146243(Gbrowse)
Chromosome: chr01 Position: 8146243 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 64.94% | 35.06% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 487 | 18.89% | 81.11% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 327 | 11.62% | 88.38% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 66 | 19.70% | 80.30% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0108146243 | G->C | LOC_Os01g14530(LOC_Os01g14530.1) | INTRON |