Detailed information of SNP:
|
SNP ID:
sf0108449212(Gbrowse)
Chromosome: chr01 Position: 8449212 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1343 | 58.97% | 41.03% |
| All Indica | 746 | 90.35% | 9.65% |
| All Japonica | 477 | 20.55% | 79.45% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 356 | 92.70% | 7.30% |
| Indica II | 189 | 89.42% | 10.58% |
| Indica Intermediate | 201 | 87.06% | 12.94% |
| Temperate Japonica | 323 | 17.03% | 82.97% |
| Tropical Japonica | 87 | 34.48% | 65.52% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0108449212 | C->T | LOC_Os01g15039(LOC_Os01g15039.1) | INTRON |