Detailed information of SNP:



SNP ID: sf0108563628(Gbrowse)

Chromosome: chr01

Position: 8563628
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 99.08% 0.92%
All Indica799 100.00% 0.00%
All Japonica497 97.59% 2.41%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 99.10% 0.90%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 88.24% 11.76%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0108563628 G->A LOC_Os01g15300(LOC_Os01g15300.2) INTRON
sf0108563628 G->A LOC_Os01g15300(LOC_Os01g15300.1) INTRON