Detailed information of SNP:
|
SNP ID:
sf0108655918(Gbrowse)
Chromosome: chr01 Position: 8655918 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1323 | 61.15% | 38.85% |
| All Indica | 773 | 37.65% | 62.35% |
| All Japonica | 489 | 96.32% | 3.68% |
| Aus | 13 | 92.31% | 7.69% |
| Indica I | 364 | 34.34% | 65.66% |
| Indica II | 205 | 47.80% | 52.20% |
| Indica Intermediate | 204 | 33.33% | 66.67% |
| Temperate Japonica | 330 | 96.97% | 3.03% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 34 | 73.53% | 26.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0108655918 | C->T | INTERGENIC | None |