Detailed information of SNP:
|
SNP ID:
sf0108678290(Gbrowse)
Chromosome: chr01 Position: 8678290 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 97.41% | 2.59% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 474 | 92.62% | 7.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 91.08% | 8.92% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 90.62% | 9.38% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0108678290 | T->G | INTERGENIC | None |