Detailed information of SNP:
|
SNP ID:
sf0108759574(Gbrowse)
Chromosome: chr01 Position: 8759574 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 91.80% | 8.20% |
| All Indica | 795 | 86.54% | 13.46% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 83.96% | 16.04% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 209 | 79.43% | 20.57% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0108759574 | A->G | LOC_Os01g15600(LOC_Os01g15600.1) | INTRON |