Detailed information of SNP:
|
SNP ID:
sf0108853920(Gbrowse)
Chromosome: chr01 Position: 8853920 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1247 | 91.90% | 8.10% |
| All Indica | 781 | 99.49% | 0.51% |
| All Japonica | 348 | 75.86% | 24.14% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 365 | 100.00% | 0.00% |
| Indica II | 207 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 230 | 90.87% | 9.13% |
| Tropical Japonica | 76 | 30.26% | 69.74% |
| Japonica Intermediate | 42 | 76.19% | 23.81% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0108853920 | C->T | LOC_Os01g15740(LOC_Os01g15740.1) | Non-Synonymous SNP |