Detailed information of SNP:
|
SNP ID:
sf0108956658(Gbrowse)
Chromosome: chr01 Position: 8956658 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1269 | 75.57% | 24.43% |
| All Indica | 773 | 74.64% | 25.36% |
| All Japonica | 381 | 75.07% | 24.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 356 | 74.72% | 25.28% |
| Indica II | 208 | 70.19% | 29.81% |
| Indica Intermediate | 209 | 78.95% | 21.05% |
| Temperate Japonica | 262 | 86.64% | 13.36% |
| Tropical Japonica | 69 | 24.64% | 75.36% |
| Japonica Intermediate | 50 | 84.00% | 16.00% |
| Group VI/Aromatic | 10 | 30.00% | 70.00% |
| Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0108956658 | A->T | INTERGENIC | None |