Detailed information of SNP:
|
SNP ID:
sf0108992891(Gbrowse)
Chromosome: chr01 Position: 8992891 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 59.09% | 40.91% |
| All Indica | 793 | 38.97% | 61.03% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 372 | 40.05% | 59.95% |
| Indica II | 212 | 35.38% | 64.62% |
| Indica Intermediate | 209 | 40.67% | 59.33% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0108992891 | A->G | INTERGENIC | None |