Detailed information of SNP:
|
SNP ID:
sf0109187806(Gbrowse)
Chromosome: chr01 Position: 9187806 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 51.88% | 48.12% |
| All Indica | 798 | 76.82% | 23.18% |
| All Japonica | 492 | 6.30% | 93.70% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 77.27% | 22.73% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 332 | 4.82% | 95.18% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 66 | 6.06% | 93.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109187806 | A->G | INTERGENIC | None |