Detailed information of SNP:
|
SNP ID:
sf0109352941(Gbrowse)
Chromosome: chr01 Position: 9352941 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 88.01% | 11.99% |
| All Indica | 793 | 98.74% | 1.26% |
| All Japonica | 438 | 66.21% | 33.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 283 | 78.80% | 21.20% |
| Tropical Japonica | 91 | 40.66% | 59.34% |
| Japonica Intermediate | 64 | 46.88% | 53.12% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109352941 | A->G | LOC_Os01g16480(LOC_Os01g16480.1) | INTRON |