Detailed information of SNP:
|
SNP ID:
sf0109354960(Gbrowse)
Chromosome: chr01 Position: 9354960 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 91.38% | 8.62% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 461 | 75.27% | 24.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 310 | 94.84% | 5.16% |
| Tropical Japonica | 90 | 23.33% | 76.67% |
| Japonica Intermediate | 61 | 52.46% | 47.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109354960 | G->A | LOC_Os01g16480(LOC_Os01g16480.1) | INTRON |