Detailed information of SNP:
|
SNP ID:
sf0109358596(Gbrowse)
Chromosome: chr01 Position: 9358596 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 54.52% | 45.48% |
| All Indica | 787 | 90.34% | 9.66% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 66 | 27.27% | 72.73% |
| Indica I | 366 | 89.62% | 10.38% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 208 | 86.54% | 13.46% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109358596 | T->G | INTERGENIC | None |