Detailed information of SNP:
|
SNP ID:
sf0109365485(Gbrowse)
Chromosome: chr01 Position: 9365485 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 97.03% | 2.97% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 62 | 50.00% | 50.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109365485 | G->T | LOC_Os01g16500(LOC_Os01g16500.1) | Synonymous |