Detailed information of SNP:
|
SNP ID:
sf0109410346(Gbrowse)
Chromosome: chr01 Position: 9410346 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 97.73% | 2.27% |
| All Indica | 789 | 96.20% | 3.80% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 208 | 87.98% | 12.02% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109410346 | G->A | LOC_Os01g16570(LOC_Os01g16570.1) | Non-Synonymous SNP |