Detailed information of SNP:
|
SNP ID:
sf0109412130(Gbrowse)
Chromosome: chr01 Position: 9412130 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 53.43% | 46.57% |
| All Indica | 795 | 88.30% | 11.70% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 371 | 92.72% | 7.28% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109412130 | C->T | INTERGENIC | None |