Detailed information of SNP:
|
SNP ID:
sf0109412193(Gbrowse)
Chromosome: chr01 Position: 9412193 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 58.80% | 41.20% |
| All Indica | 797 | 95.48% | 4.52% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109412193 | G->A | INTERGENIC | None |