Detailed information of SNP:
|
SNP ID:
sf0109415339(Gbrowse)
Chromosome: chr01 Position: 9415339 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 97.79% | 2.21% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 479 | 94.15% | 5.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 99.70% | 0.30% |
| Tropical Japonica | 87 | 73.56% | 26.44% |
| Japonica Intermediate | 61 | 93.44% | 6.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109415339 | C->T | INTERGENIC | None |