Detailed information of SNP:
|
SNP ID:
sf0109547514(Gbrowse)
Chromosome: chr01 Position: 9547514 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1323 | 81.94% | 18.06% |
| All Indica | 794 | 99.50% | 0.50% |
| All Japonica | 406 | 42.61% | 57.39% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 292 | 27.74% | 72.26% |
| Tropical Japonica | 61 | 95.08% | 4.92% |
| Japonica Intermediate | 53 | 64.15% | 35.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109547514 | G->T | INTERGENIC | None |