Detailed information of SNP:
|
SNP ID:
sf0109556782(Gbrowse)
Chromosome: chr01 Position: 9556782 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 94.55% | 5.45% |
| All Indica | 792 | 91.16% | 8.84% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 89.52% | 10.48% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109556782 | G->T | INTERGENIC | None |