Detailed information of SNP:
|
SNP ID:
sf0109564516(Gbrowse)
Chromosome: chr01 Position: 9564516 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 84.68% | 15.32% |
| All Indica | 797 | 97.24% | 2.76% |
| All Japonica | 496 | 62.10% | 37.90% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 78.21% | 21.79% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 67 | 40.30% | 59.70% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109564516 | T->C | INTERGENIC | None |