Detailed information of SNP:
|
SNP ID:
sf0109579030(Gbrowse)
Chromosome: chr01 Position: 9579030 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 52.24% | 47.76% |
| All Indica | 775 | 86.19% | 13.81% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 60 | 16.67% | 83.33% |
| Indica I | 374 | 88.50% | 11.50% |
| Indica II | 192 | 86.46% | 13.54% |
| Indica Intermediate | 209 | 81.82% | 18.18% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109579030 | T->C | INTERGENIC | None |