Detailed information of SNP:
|
SNP ID:
sf0109579058(Gbrowse)
Chromosome: chr01 Position: 9579058 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1216 | 53.04% | 46.96% |
| All Indica | 667 | 89.06% | 10.94% |
| All Japonica | 493 | 3.65% | 96.35% |
| Aus | 12 | 66.67% | 33.33% |
| Indica I | 327 | 89.30% | 10.70% |
| Indica II | 162 | 93.83% | 6.17% |
| Indica Intermediate | 178 | 84.27% | 15.73% |
| Temperate Japonica | 333 | 2.10% | 97.90% |
| Tropical Japonica | 92 | 8.70% | 91.30% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 33 | 54.55% | 45.45% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109579058 | T->C | INTERGENIC | None |