Detailed information of SNP:
|
SNP ID:
sf0109676570(Gbrowse)
Chromosome: chr01 Position: 9676570 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1218 | 93.84% | 6.16% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 301 | 75.08% | 24.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 191 | 62.83% | 37.17% |
| Tropical Japonica | 67 | 100.00% | 0.00% |
| Japonica Intermediate | 43 | 90.70% | 9.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109676570 | C->T | INTERGENIC | None |