Detailed information of SNP:
|
SNP ID:
sf0109767625(Gbrowse)
Chromosome: chr01 Position: 9767625 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 56.45% | 43.55% |
| All Indica | 799 | 93.74% | 6.26% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109767625 | A->G | INTERGENIC | None |