Detailed information of SNP:
|
SNP ID:
sf0109817370(Gbrowse)
Chromosome: chr01 Position: 9817370 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 97.58% | 2.42% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 485 | 93.81% | 6.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 329 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 73.03% | 26.97% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109817370 | A->T | LOC_Os01g17070(LOC_Os01g17070.2) | INTRON |
| sf0109817370 | A->T | LOC_Os01g17070(LOC_Os01g17070.1) | INTRON |