Detailed information of SNP:
|
SNP ID:
sf0109941680(Gbrowse)
Chromosome: chr01 Position: 9941680 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 64.80% | 35.20% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 470 | 3.83% | 96.17% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 321 | 1.87% | 98.13% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 55 | 5.45% | 94.55% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0109941680 | A->G | LOC_Os01g17279(LOC_Os01g17279.1) | INTRON |