Detailed information of SNP:
SNP ID:
sf0109989028(Gbrowse)
Chromosome: chr01 Position: 9989028 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1361 | 93.53% | 6.47% |
All Indica | 743 | 88.43% | 11.57% |
All Japonica | 496 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 344 | 91.86% | 8.14% |
Indica II | 200 | 88.00% | 12.00% |
Indica Intermediate | 199 | 82.91% | 17.09% |
Temperate Japonica | 334 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 13 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0109989028 | T->A | INTERGENIC | None |