Detailed information of SNP:



SNP ID: sf0109989028(Gbrowse)

Chromosome: chr01

Position: 9989028
Major allele: T

Minor allele: A

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1361 93.53% 6.47%
All Indica743 88.43% 11.57%
All Japonica496 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I344 91.86% 8.14%
Indica II200 88.00% 12.00%
Indica Intermediate199 82.91% 17.09%
Temperate Japonica334 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic13 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0109989028 T->A INTERGENIC None