Detailed information of SNP:
|
SNP ID:
sf0110089785(Gbrowse)
Chromosome: chr01 Position: 10089785 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1336 | 95.81% | 4.19% |
| All Indica | 721 | 92.65% | 7.35% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 338 | 91.42% | 8.58% |
| Indica II | 190 | 94.74% | 5.26% |
| Indica Intermediate | 193 | 92.75% | 7.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0110089785 | G->A | INTERGENIC | None |