Detailed information of SNP:
|
SNP ID:
sf0110093943(Gbrowse)
Chromosome: chr01 Position: 10093943 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 50.71% | 49.29% |
| All Indica | 788 | 85.41% | 14.59% |
| All Japonica | 496 | 3.02% | 96.98% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 367 | 88.28% | 11.72% |
| Indica II | 212 | 77.36% | 22.64% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0110093943 | G->A | LOC_Os01g18040(LOC_Os01g18040.1) | Synonymous |