Detailed information of SNP:
|
SNP ID:
sf0110175200(Gbrowse)
Chromosome: chr01 Position: 10175200 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 54.30% | 45.70% |
| All Indica | 747 | 84.61% | 15.39% |
| All Japonica | 495 | 3.03% | 96.97% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 351 | 86.04% | 13.96% |
| Indica II | 203 | 84.73% | 15.27% |
| Indica Intermediate | 193 | 81.87% | 18.13% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 92 | 7.61% | 92.39% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0110175200 | A->G | LOC_Os01g18180(LOC_Os01g18180.1) | Synonymous |