Detailed information of SNP:
|
SNP ID:
sf0110180822(Gbrowse)
Chromosome: chr01 Position: 10180822 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 51.68% | 48.32% |
| All Indica | 752 | 80.05% | 19.95% |
| All Japonica | 496 | 3.23% | 96.77% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 345 | 75.65% | 24.35% |
| Indica II | 206 | 88.83% | 11.17% |
| Indica Intermediate | 201 | 78.61% | 21.39% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0110180822 | A->G | LOC_Os01g18190(LOC_Os01g18190.1) | Synonymous |