Detailed information of SNP:
|
SNP ID:
sf0110366745(Gbrowse)
Chromosome: chr01 Position: 10366745 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.62% | 42.38% |
| All Indica | 799 | 93.12% | 6.88% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0110366745 | C->T | INTERGENIC | None |