Detailed information of SNP:
|
SNP ID:
sf0110461667(Gbrowse)
Chromosome: chr01 Position: 10461667 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 96.50% | 3.50% |
| All Indica | 752 | 93.88% | 6.12% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 347 | 93.95% | 6.05% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 195 | 89.74% | 10.26% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0110461667 | G->T | INTERGENIC | None |