Detailed information of SNP:
|
SNP ID:
sf0110546965(Gbrowse)
Chromosome: chr01 Position: 10546965 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 69.42% | 30.58% |
| All Indica | 787 | 47.40% | 52.60% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 27.95% | 72.05% |
| Indica II | 212 | 60.85% | 39.15% |
| Indica Intermediate | 210 | 67.62% | 32.38% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0110546965 | A->G | INTERGENIC | None |