Detailed information of SNP:
|
SNP ID:
sf0110636675(Gbrowse)
Chromosome: chr01 Position: 10636675 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 58.16% | 41.84% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 66 | 42.42% | 57.58% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 35.90% | 64.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0110636675 | T->A | INTERGENIC | None |